Assembly
ASM1993054v1
BioProject PRJNA759546 · BioSample SAMN21169179
GENOME-RESOLVED EVIDENCE
GCA_019930545.1
Sporolactobacillus terrae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3344205 bp · GC 45.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 7/8 | 0.875 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_028976799.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 385.500 / 0.98900 | Bridge orthogroup OG0001120 |
| accBWP_028976408.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 155.600 / 0.98800 | Annotation: gene_symbol |
| accCWP_028976407.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 700.900 / 0.99100 | Annotation: gene_symbol |
| accDWP_028976798.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 390.600 / 0.98600 | Bridge orthogroup OG0000844 |
| adhEWP_128167080.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1132.900 / 0.98700 | Bridge orthogroup OG0002334 |
| fabDWP_028977926.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 340.600 / 0.99000 | Annotation: gene_symbol |
| fabFWP_028976115.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 643.100 / 0.99300 | Annotation: gene_symbol |
| fabGWP_028977927.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 273.900 / 0.99600 | Bridge orthogroup OG0000008 |
| fabIWP_028976086.1 · enoyl-ACP reductase FabI | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 382.500 / 0.97300 | Annotation: gene_symbol |
| fabZWP_223362378.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 173.500 / 0.77600 | Bridge orthogroup OG0000074 |
| lctPWP_128166864.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 424.600 / 0.99400 | Bridge orthogroup OG0000731 |
| fabGWP_010023619.1 · SDR family NAD(P)-dependent oxidoreductase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 83.000 / 0.78600 | Profile only |
| fabGWP_028976086.1 · enoyl-ACP reductase FabI | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 76.100 / 0.98400 | Profile only |
| accCWP_028977852.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 502.500 / 0.98700 | Profile only |
| crtWP_028976169.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.200 / 0.99200 | Profile only |
| fabGWP_128166015.1 · glucose-1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 232.700 / 0.98800 | Profile only |
| fabGWP_128165950.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.900 / 0.97600 | Profile only |
| fabGWP_164875452.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.300 / 0.96400 | Profile only |
| fabGWP_028975773.1 · acetoin reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.500 / 0.96800 | Bridge orthogroup OG0000008 |
| fabGWP_028976661.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.400 / 0.98800 | Profile only |
| fabGWP_128166160.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 178.100 / 0.97600 | Profile only |
| fabGWP_028977135.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.600 / 0.98800 | Profile only |
| fabGWP_028976259.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 174.100 / 0.79800 | Bridge orthogroup OG0000242 |
| fabGWP_028975730.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.200 / 0.95600 | Profile only |
| fabGWP_028977564.1 · enoyl-[acyl-carrier-protein] reductase FabL | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 162.800 / 0.97200 | Profile only |
| fabGWP_128165967.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 160.200 / 0.97600 | Profile only |
| fabGWP_028975595.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 136.800 / 0.97600 | Profile only |
| fabGWP_028976551.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 118.100 / 0.83500 | Bridge orthogroup OG0000242 |
| fabGWP_028975569.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 110.200 / 0.83900 | Bridge orthogroup OG0000242 |
| fabHWP_028976116.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 313.000 / 0.98500 | Profile only |
| fabHWP_028976486.1 · ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 240.900 / 1.00000 | Profile only |
| fabHWP_028975693.1 · 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 211.200 / 0.97900 | Profile only |
| fabLWP_028977564.1 · enoyl-[acyl-carrier-protein] reductase FabL | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 364.600 / 0.97600 | Annotation: gene_symbol |
| fabLWP_028977927.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 235.400 / 0.98000 | Profile only |
| fabLWP_128166015.1 · glucose-1-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 228.800 / 0.98400 | Profile only |
| fabLWP_128165950.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 213.200 / 0.97600 | Profile only |
| fabLWP_164875452.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.200 / 0.99200 | Profile only |
| fabLWP_028975773.1 · acetoin reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.700 / 0.96000 | Profile only |
| fabLWP_028977135.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.900 / 0.98000 | Profile only |
| fabLWP_128165967.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.500 / 0.98400 | Profile only |
| fabLWP_028975595.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 156.600 / 0.97600 | Profile only |
| fabLWP_128166160.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.400 / 0.94000 | Profile only |
| fabLWP_028976661.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.100 / 0.98400 | Profile only |
| fabLWP_028975730.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.800 / 0.95200 | Profile only |
| fabLWP_028976259.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 146.700 / 0.82100 | Profile only |
| fabLWP_028976551.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 111.700 / 0.77800 | Profile only |
| ldhWP_128167046.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 285.300 / 0.98700 | Profile only |
| ldhWP_028975883.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 238.800 / 0.96500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.