Assembly
ASM1997765v1
BioProject PRJDB11893 · BioSample SAMD00388684
GENOME-RESOLVED EVIDENCE
GCA_019977655.1
Clostridium gelidum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 6041432 bp · GC 29.000%
Completeness 99.070% · contamination 0.540%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 1/8 | 0.125 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 3 |
| bcd | butyryl-CoA dehydrogenase | 3 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcd2_1psyc5s11_17930 | BCZ45726.1 | OG0000034 | AP024849.1:2073562–2074701 + | butyryl-CoA dehydrogenase [Clostridium gelidum] |
| bcd2_2psyc5s11_17990 | BCZ45732.1 | OG0000034 | AP024849.1:2082948–2084087 + | butyryl-CoA dehydrogenase [Clostridium gelidum] |
| accCpsyc5s11_43320 | BCZ48265.1 | OG0000061 | AP024849.1:4702585–4703937 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium gelidum] |
| ldh1psyc5s11_44040 | BCZ48337.1 | OG0000131 | AP024849.1:4783297–4784250 - | L-lactate dehydrogenase 1 [Clostridium gelidum] |
| ldhpsyc5s11_46120 | BCZ48545.1 | OG0000131 | AP024849.1:4990340–4991293 - | L-lactate dehydrogenase [Clostridium gelidum] |
| ldh3psyc5s11_48330 | BCZ48766.1 | OG0000131 | AP024849.1:5236208–5237158 - | L-lactate dehydrogenase 3 [Clostridium gelidum] |
| hbdpsyc5s11_03860 | BCZ44319.1 | OG0000229 | AP024849.1:449767–450615 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium gelidum] |
| bcdpsyc5s11_10980 | BCZ45031.1 | OG0000229 | AP024849.1:1258383–1259327 + | butyryl-CoA dehydrogenase [Clostridium gelidum] |
| thlpsyc5s11_05700 | BCZ44503.1 | OG0000234 | AP024849.1:641486–642667 + | acetyl-CoA acetyltransferase [Clostridium gelidum] |
| thilpsyc5s11_54680 | BCZ49401.1 | OG0000234 | AP024849.1:5969133–5970311 - | acetyl-CoA acetyltransferase [Clostridium gelidum] |
| glcApsyc5s11_17910 | BCZ45724.1 | OG0001228 | AP024849.1:2070386–2071930 + | L-lactate permease [Clostridium gelidum] |
| crtpsyc5s11_03820 | BCZ44315.1 | OG0001394 | AP024849.1:445522–446307 + | short-chain-enoyl-CoA hydratase [Clostridium gelidum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.