Assembly
ASM2009929v1
BioProject PRJNA231221 · BioSample SAMN21218847
GENOME-RESOLVED EVIDENCE
GCA_020099295.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4067407 bp · GC 28.000%
Completeness 95.030% · contamination 0.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLA336_05780 | UBI13060.1 | OG0000061 | CP083649.1:1217629–1218975 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sporogenes] |
| ldhLA336_16765 | UBI11585.1 | OG0000131 | CP083649.1:3563982–3564938 + | L-lactate dehydrogenase [Clostridium sporogenes] |
| accBLA336_05770 | UBI13058.1 | OG0000212 | CP083649.1:1216668–1217144 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sporogenes] |
| hbdLA336_08450 | UBI13543.1 | OG0000229 | CP083649.1:1715076–1715906 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sporogenes] |
| thlLA336_08455 | UBI13544.1 | OG0000234 | CP083649.1:1715931–1717109 + | acetyl-CoA C-acetyltransferase [Clostridium sporogenes] |
| fabZLA336_05775 | UBI13059.1 | OG0000785 | CP083649.1:1217164–1217598 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sporogenes] |
| adhELA336_03680 | UBI12703.1 | OG0001124 | CP083649.1:792864–795452 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sporogenes] |
| rnfALA336_03525 | UBI12673.1 | OG0001328 | CP083649.1:757204–757782 - | electron transport complex protein RnfA [Clostridium sporogenes] |
| crtLA336_08445 | UBI13542.1 | OG0001639 | CP083649.1:1714274–1715056 + | short-chain-enoyl-CoA hydratase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.