Assembly
ASM2013833v1
BioProject PRJNA707150 · BioSample SAMN18175752
GENOME-RESOLVED EVIDENCE
GCA_020138335.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3174807 bp · GC 28.500%
Completeness 92.630% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF27_06155 | UBK27462.1 | OG0000061 | CP075903.1:1411701–1413053 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF27_00735 | UBK26458.1 | OG0000131 | CP075903.1:162148–163101 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF27_06145 | UBK27460.1 | OG0000212 | CP075903.1:1410776–1411267 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF27_12190 | UBK25967.1 | OG0000229 | CP075903.1:2719137–2719985 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF27_11570 | UBK25873.1 | OG0000234 | CP075903.1:2598161–2599339 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF27_06150 | UBK27461.1 | OG0000785 | CP075903.1:1411270–1411689 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF27_13535 | UBK26205.1 | OG0001124 | CP075903.1:2989750–2992347 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF27_01770 | UBK27603.1 | OG0001228 | CP075903.1:397980–399497 + | L-lactate permease [Clostridium perfringens] |
| crtKLF27_12210 | UBK25971.1 | OG0001394 | CP075903.1:2723112–2723894 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF27_00690 | UBK26449.1 | OG0001639 | CP075903.1:150215–150991 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.