Assembly
ASM2013835v1
BioProject PRJNA707150 · BioSample SAMN18175751
GENOME-RESOLVED EVIDENCE
GCA_020138355.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3291309 bp · GC 28.500%
Completeness 97.080% · contamination 1.940%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF36_06495 | UBK30279.1 | OG0000061 | CP075905.1:1517462–1518814 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF36_00735 | UBK29210.1 | OG0000131 | CP075905.1:161450–162403 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF36_06485 | UBK30277.1 | OG0000212 | CP075905.1:1516537–1517028 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF36_12540 | UBK28713.1 | OG0000229 | CP075905.1:2845161–2846009 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF36_11925 | UBK28619.1 | OG0000234 | CP075905.1:2727670–2728848 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF36_06490 | UBK30278.1 | OG0000785 | CP075905.1:1517031–1517450 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF36_13920 | UBK28956.1 | OG0001124 | CP075905.1:3120857–3123454 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF36_01800 | UBK29401.1 | OG0001228 | CP075905.1:413345–414868 + | L-lactate permease [Clostridium perfringens] |
| crtKLF36_12560 | UBK28717.1 | OG0001394 | CP075905.1:2849136–2849918 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF36_00695 | UBK29202.1 | OG0001639 | CP075905.1:150796–151572 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| fabGKLF36_05565 | UBK30100.1 | OG0002940 | CP075905.1:1324630–1325391 + | 3-oxoacyl-ACP reductase FabG [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.