Assembly
ASM2013837v1
BioProject PRJNA707150 · BioSample SAMN18175738
GENOME-RESOLVED EVIDENCE
GCA_020138375.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3341573 bp · GC 28.500%
Completeness 93.950% · contamination 2.040%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF45_06265 | UBK32991.1 | OG0000061 | CP075908.1:1443977–1445329 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF45_00765 | UBK31962.1 | OG0000131 | CP075908.1:163630–164583 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF45_06255 | UBK32989.1 | OG0000212 | CP075908.1:1443052–1443543 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF45_12300 | UBK31464.1 | OG0000229 | CP075908.1:2758472–2759320 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF45_11660 | UBK31364.1 | OG0000234 | CP075908.1:2636059–2637237 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF45_06260 | UBK32990.1 | OG0000785 | CP075908.1:1443546–1443965 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF45_13665 | UBK31703.1 | OG0001124 | CP075908.1:3033240–3035837 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF45_01815 | UBK32146.1 | OG0001228 | CP075908.1:408265–409788 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF45_06215 | UBK32981.1 | OG0001328 | CP075908.1:1436411–1436986 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF45_12320 | UBK31468.1 | OG0001394 | CP075908.1:2762447–2763229 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF45_00725 | UBK31954.1 | OG0001639 | CP075908.1:152981–153757 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.