Assembly
ASM2013839v1
BioProject PRJNA707150 · BioSample SAMN18175737
GENOME-RESOLVED EVIDENCE
GCA_020138395.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3508113 bp · GC 28.500%
Completeness 97.990% · contamination 2.870%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF25_06780 | UBK36097.1 | OG0000061 | CP075912.1:1558141–1559493 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF25_00775 | UBK34954.1 | OG0000131 | CP075912.1:168180–169133 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF25_06770 | UBK36095.1 | OG0000212 | CP075912.1:1557216–1557707 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF25_13305 | UBK34451.1 | OG0000229 | CP075912.1:2948833–2949681 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF25_12695 | UBK34356.1 | OG0000234 | CP075912.1:2830832–2832010 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF25_06775 | UBK36096.1 | OG0000785 | CP075912.1:1557710–1558129 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF25_14605 | UBK34679.1 | OG0001124 | CP075912.1:3206352–3208949 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF25_01870 | UBK35156.1 | OG0001228 | CP075912.1:426754–428277 + | L-lactate permease [Clostridium perfringens] |
| crtKLF25_13325 | UBK34455.1 | OG0001394 | CP075912.1:2952808–2953590 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF25_00735 | UBK34946.1 | OG0001639 | CP075912.1:157528–158304 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.