Assembly
ASM2013841v1
BioProject PRJNA707150 · BioSample SAMN18175748
GENOME-RESOLVED EVIDENCE
GCA_020138415.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3516517 bp · GC 28.500%
Completeness 98.190% · contamination 3.700%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF44_06690 | UBK39093.1 | OG0000061 | CP075917.1:1537922–1539274 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF44_00680 | UBK37955.1 | OG0000131 | CP075917.1:153813–154766 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF44_06680 | UBK39091.1 | OG0000212 | CP075917.1:1536997–1537488 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF44_12950 | UBK37482.1 | OG0000229 | CP075917.1:2885249–2886097 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF44_12340 | UBK37389.1 | OG0000234 | CP075917.1:2766766–2767944 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF44_06685 | UBK39092.1 | OG0000785 | CP075917.1:1537491–1537910 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF44_14345 | UBK37729.1 | OG0001124 | CP075917.1:3163141–3165738 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF44_01770 | UBK38156.1 | OG0001228 | CP075917.1:408450–409973 + | L-lactate permease [Clostridium perfringens] |
| crtKLF44_12970 | UBK37486.1 | OG0001394 | CP075917.1:2889224–2890006 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF44_00640 | UBK37947.1 | OG0001639 | CP075917.1:143161–143937 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.