Assembly
ASM2013843v1
BioProject PRJNA707150 · BioSample SAMN18175747
GENOME-RESOLVED EVIDENCE
GCA_020138435.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3453469 bp · GC 28.500%
Completeness 97.220% · contamination 5.280%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF28_06750 | UBK42186.1 | OG0000061 | CP075922.1:1544695–1546047 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF28_00670 | UBK41034.1 | OG0000131 | CP075922.1:151380–152333 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF28_06740 | UBK42184.1 | OG0000212 | CP075922.1:1543770–1544261 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF28_12915 | UBK40565.1 | OG0000229 | CP075922.1:2894364–2895212 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF28_12305 | UBK40471.1 | OG0000234 | CP075922.1:2776934–2778112 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF28_06745 | UBK42185.1 | OG0000785 | CP075922.1:1544264–1544683 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF28_14215 | UBK40794.1 | OG0001124 | CP075922.1:3151968–3154565 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF28_01675 | UBK41216.1 | OG0001228 | CP075922.1:391145–392668 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF28_06700 | UBK42176.1 | OG0001328 | CP075922.1:1537129–1537704 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF28_12935 | UBK40569.1 | OG0001394 | CP075922.1:2898339–2899121 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF28_00630 | UBK41026.1 | OG0001639 | CP075922.1:140723–141499 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.