Assembly
ASM2013847v1
BioProject PRJNA707150 · BioSample SAMN18175736
GENOME-RESOLVED EVIDENCE
GCA_020138475.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3300487 bp · GC 28.500%
Completeness 93.890% · contamination 2.200%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF41_06605 | UBK48131.1 | OG0000061 | CP075932.1:1413544–1414896 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF41_01175 | UBK47113.1 | OG0000131 | CP075932.1:148571–149524 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF41_06595 | UBK48129.1 | OG0000212 | CP075932.1:1412619–1413110 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF41_12645 | UBK46632.1 | OG0000229 | CP075932.1:2729660–2730508 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF41_12005 | UBK46532.1 | OG0000234 | CP075932.1:2607244–2608422 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF41_06600 | UBK48130.1 | OG0000785 | CP075932.1:1413113–1413532 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF41_14040 | UBK46876.1 | OG0001124 | CP075932.1:3003755–3006352 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF41_02215 | UBK47298.1 | OG0001228 | CP075932.1:388689–390212 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF41_06555 | UBK48121.1 | OG0001328 | CP075932.1:1405978–1406553 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF41_12665 | UBK46636.1 | OG0001394 | CP075932.1:2733635–2734417 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF41_01135 | UBK47105.1 | OG0001639 | CP075932.1:137922–138698 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.