Assembly
ASM2013849v1
BioProject PRJNA707150 · BioSample SAMN18175745
GENOME-RESOLVED EVIDENCE
GCA_020138495.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3604933 bp · GC 28.000%
Completeness 98.520% · contamination 4.770%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF52_06605 | UBK51055.1 | OG0000061 | CP075934.1:1509927–1511279 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF52_00680 | UBK49935.1 | OG0000131 | CP075934.1:152600–153553 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF52_06595 | UBK51053.1 | OG0000212 | CP075934.1:1509002–1509493 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF52_12930 | UBK49465.1 | OG0000229 | CP075934.1:2876386–2877234 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF52_12135 | UBK49337.1 | OG0000234 | CP075934.1:2724926–2726104 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF52_06600 | UBK51054.1 | OG0000785 | CP075934.1:1509496–1509915 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF52_14230 | UBK49693.1 | OG0001124 | CP075934.1:3133589–3136186 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF52_01780 | UBK50136.1 | OG0001228 | CP075934.1:411400–412923 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF52_06555 | UBK51045.1 | OG0001328 | CP075934.1:1502360–1502935 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF52_12950 | UBK49469.1 | OG0001394 | CP075934.1:2880361–2881143 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF52_00640 | UBK49927.1 | OG0001639 | CP075934.1:141979–142755 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.