Assembly
ASM2013853v1
BioProject PRJNA707150 · BioSample SAMN18175728
GENOME-RESOLVED EVIDENCE
GCA_020138535.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3026166 bp · GC 28.000%
Completeness 95.490% · contamination 1.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF47_05920 | UBK56747.1 | OG0000061 | CP075945.1:1341284–1342636 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF47_00580 | UBK55803.1 | OG0000131 | CP075945.1:130388–131341 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF47_05910 | UBK56745.1 | OG0000212 | CP075945.1:1340359–1340850 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF47_11860 | UBK55372.1 | OG0000229 | CP075945.1:2597246–2598094 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF47_11290 | UBK55288.1 | OG0000234 | CP075945.1:2485748–2486926 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF47_05915 | UBK56746.1 | OG0000785 | CP075945.1:1340853–1341272 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF47_13170 | UBK55599.1 | OG0001124 | CP075945.1:2855446–2858043 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF47_11880 | UBK55376.1 | OG0001394 | CP075945.1:2601221–2602003 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.