Assembly
ASM2013855v1
BioProject PRJNA707150 · BioSample SAMN18175725
GENOME-RESOLVED EVIDENCE
GCA_020138555.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2992549 bp · GC 28.500%
Completeness 94.870% · contamination 0.730%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF43_05740 | UBK59288.1 | OG0000061 | CP075947.1:1299928–1301280 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF43_00595 | UBK58369.1 | OG0000131 | CP075947.1:131288–132241 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF43_05730 | UBK59286.1 | OG0000212 | CP075947.1:1299003–1299494 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF43_11735 | UBK57928.1 | OG0000229 | CP075947.1:2573587–2574435 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF43_11165 | UBK57843.1 | OG0000234 | CP075947.1:2462148–2463326 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF43_05735 | UBK59287.1 | OG0000785 | CP075947.1:1299497–1299916 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF43_13035 | UBK58157.1 | OG0001124 | CP075947.1:2832182–2834779 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF43_11755 | UBK57932.1 | OG0001394 | CP075947.1:2577562–2578344 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.