Assembly
ASM2013857v1
BioProject PRJNA707150 · BioSample SAMN18175724
GENOME-RESOLVED EVIDENCE
GCA_020138575.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3033971 bp · GC 28.000%
Completeness 94.700% · contamination 1.960%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF23_05995 | UBK61840.1 | OG0000061 | CP075950.1:1332822–1334174 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF23_00590 | UBK60875.1 | OG0000131 | CP075950.1:130105–131058 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF23_05985 | UBK61838.1 | OG0000212 | CP075950.1:1331897–1332388 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF23_11730 | UBK60440.1 | OG0000229 | CP075950.1:2560546–2561394 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF23_11150 | UBK60353.1 | OG0000234 | CP075950.1:2446190–2447368 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF23_05990 | UBK61839.1 | OG0000785 | CP075950.1:1332391–1332810 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF23_13115 | UBK60680.1 | OG0001124 | CP075950.1:2836837–2839434 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF23_01570 | UBK61046.1 | OG0001228 | CP075950.1:357093–358616 + | L-lactate permease [Clostridium perfringens] |
| crtKLF23_11750 | UBK60444.1 | OG0001394 | CP075950.1:2564521–2565303 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.