Assembly
ASM2013859v1
BioProject PRJNA707150 · BioSample SAMN18175749
GENOME-RESOLVED EVIDENCE
GCA_020138595.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3349893 bp · GC 28.500%
Completeness 97.300% · contamination 5.550%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF30_06460 | UBK64697.1 | OG0000061 | CP075953.1:1488094–1489446 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF30_00760 | UBK63627.1 | OG0000131 | CP075953.1:164242–165195 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF30_06450 | UBK64695.1 | OG0000212 | CP075953.1:1487169–1487660 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF30_12845 | UBK63141.1 | OG0000229 | CP075953.1:2859420–2860268 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF30_12185 | UBK63038.1 | OG0000234 | CP075953.1:2735616–2736794 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF30_06455 | UBK64696.1 | OG0000785 | CP075953.1:1487663–1488082 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF30_14145 | UBK63369.1 | OG0001124 | CP075953.1:3116388–3118985 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF30_01855 | UBK63827.1 | OG0001228 | CP075953.1:419570–421093 + | L-lactate permease [Clostridium perfringens] |
| crtKLF30_12865 | UBK63145.1 | OG0001394 | CP075953.1:2863395–2864177 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF30_00720 | UBK63619.1 | OG0001639 | CP075953.1:153596–154372 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.