Assembly
ASM2013861v1
BioProject PRJNA707150 · BioSample SAMN18175723
GENOME-RESOLVED EVIDENCE
GCA_020138615.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3036777 bp · GC 28.500%
Completeness 95.830% · contamination 1.420%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF46_05910 | UBK67295.1 | OG0000061 | CP075956.1:1321915–1323267 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF46_00590 | UBK66358.1 | OG0000131 | CP075956.1:130419–131372 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF46_05900 | UBK67293.1 | OG0000212 | CP075956.1:1320990–1321481 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF46_11710 | UBK65924.1 | OG0000229 | CP075956.1:2569569–2570417 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF46_11140 | UBK65839.1 | OG0000234 | CP075956.1:2458148–2459326 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF46_05905 | UBK67294.1 | OG0000785 | CP075956.1:1321484–1321903 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF46_13010 | UBK66154.1 | OG0001124 | CP075956.1:2828156–2830753 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF46_11730 | UBK65928.1 | OG0001394 | CP075956.1:2573544–2574326 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.