Assembly
ASM2013863v1
BioProject PRJNA707150 · BioSample SAMN18175732
GENOME-RESOLVED EVIDENCE
GCA_020138635.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3022186 bp · GC 28.000%
Completeness 92.490% · contamination 2.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabG | 3-oxoacyl-ACP reductase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF38_05590 | UBK69843.1 | OG0000061 | CP075961.1:1287233–1288585 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF38_00620 | UBK68941.1 | OG0000131 | CP075961.1:134684–135637 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF38_05580 | UBK69841.1 | OG0000212 | CP075961.1:1286308–1286799 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF38_11500 | UBK68497.1 | OG0000229 | CP075961.1:2563358–2564206 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF38_10930 | UBK68412.1 | OG0000234 | CP075961.1:2453171–2454349 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF38_05585 | UBK69842.1 | OG0000785 | CP075961.1:1286802–1287221 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF38_12780 | UBK68724.1 | OG0001124 | CP075961.1:2816491–2819088 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF38_01580 | UBK69107.1 | OG0001228 | CP075961.1:356548–358071 + | L-lactate permease [Clostridium perfringens] |
| crtKLF38_11520 | UBK68501.1 | OG0001394 | CP075961.1:2567333–2568115 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| fabGKLF38_04870 | UBK69704.1 | OG0002940 | CP075961.1:1136515–1137276 + | 3-oxoacyl-ACP reductase FabG [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.