Assembly
ASM2013867v1
BioProject PRJNA707150 · BioSample SAMN18175730
GENOME-RESOLVED EVIDENCE
GCA_020138675.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2959045 bp · GC 28.000%
Completeness 92.310% · contamination 2.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF31_05510 | UBK74952.1 | OG0000061 | CP075966.1:1278366–1279718 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF31_00600 | UBK74066.1 | OG0000131 | CP075966.1:131927–132880 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF31_05500 | UBK74950.1 | OG0000212 | CP075966.1:1277441–1277932 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF31_11185 | UBK73631.1 | OG0000229 | CP075966.1:2511977–2512825 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF31_10605 | UBK73544.1 | OG0000234 | CP075966.1:2400962–2402140 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF31_05505 | UBK74951.1 | OG0000785 | CP075966.1:1277935–1278354 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF31_12490 | UBK73859.1 | OG0001124 | CP075966.1:2768415–2771012 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF31_01545 | UBK74230.1 | OG0001228 | CP075966.1:354054–355577 + | L-lactate permease [Clostridium perfringens] |
| crtKLF31_11205 | UBK73635.1 | OG0001394 | CP075966.1:2515952–2516734 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.