Assembly
ASM2013869v1
BioProject PRJNA707150 · BioSample SAMN18175729
GENOME-RESOLVED EVIDENCE
GCA_020138695.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3051240 bp · GC 28.500%
Completeness 93.850% · contamination 2.090%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF35_05570 | UBK76204.1 | OG0000061 | CP075968.1:1282908–1284260 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF35_00610 | UBK75296.1 | OG0000131 | CP075968.1:133015–133968 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF35_05560 | UBK76202.1 | OG0000212 | CP075968.1:1281983–1282474 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF35_11645 | UBK77326.1 | OG0000229 | CP075968.1:2591613–2592461 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF35_10980 | UBK77227.1 | OG0000234 | CP075968.1:2462867–2464045 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF35_05565 | UBK76203.1 | OG0000785 | CP075968.1:1282477–1282896 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF35_12950 | UBK77554.1 | OG0001124 | CP075968.1:2848078–2850675 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF35_01605 | UBK75468.1 | OG0001228 | CP075968.1:359640–361163 + | L-lactate permease [Clostridium perfringens] |
| crtKLF35_11665 | UBK77330.1 | OG0001394 | CP075968.1:2595588–2596370 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.