Assembly
ASM2013871v1
BioProject PRJNA707150 · BioSample SAMN18175740
GENOME-RESOLVED EVIDENCE
GCA_020138715.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3333590 bp · GC 28.500%
Completeness 94.700% · contamination 2.000%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF29_06345 | UBK78974.1 | OG0000061 | CP075970.1:1463411–1464763 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF29_00735 | UBK77918.1 | OG0000131 | CP075970.1:160816–161769 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF29_06335 | UBK78972.1 | OG0000212 | CP075970.1:1462486–1462977 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF29_12430 | UBK80112.1 | OG0000229 | CP075970.1:2797520–2798368 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF29_11825 | UBK80019.1 | OG0000234 | CP075970.1:2679394–2680572 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF29_06340 | UBK78973.1 | OG0000785 | CP075970.1:1462980–1463399 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF29_13765 | UBK80348.1 | OG0001124 | CP075970.1:3062677–3065274 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF29_01770 | UBK80496.1 | OG0001228 | CP075970.1:401326–402846 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF29_06295 | UBK78964.1 | OG0001328 | CP075970.1:1455845–1456420 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF29_12450 | UBK80116.1 | OG0001394 | CP075970.1:2801495–2802277 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF29_00695 | UBK77910.1 | OG0001639 | CP075970.1:150166–150942 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.