Assembly
ASM2013873v1
BioProject PRJNA707150 · BioSample SAMN18175739
GENOME-RESOLVED EVIDENCE
GCA_020138735.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3314225 bp · GC 28.500%
Completeness 93.890% · contamination 2.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF50_06105 | UBK81764.1 | OG0000061 | CP075973.1:1413506–1414858 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF50_00660 | UBK80753.1 | OG0000131 | CP075973.1:148571–149524 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF50_06095 | UBK81762.1 | OG0000212 | CP075973.1:1412581–1413072 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF50_12150 | UBK82891.1 | OG0000229 | CP075973.1:2729615–2730463 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF50_11510 | UBK82791.1 | OG0000234 | CP075973.1:2607200–2608378 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF50_06100 | UBK81763.1 | OG0000785 | CP075973.1:1413075–1413494 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF50_13545 | UBK83136.1 | OG0001124 | CP075973.1:3003710–3006307 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF50_01705 | UBK80938.1 | OG0001228 | CP075973.1:388689–390212 + | L-lactate permease [Clostridium perfringens] |
| rnfAKLF50_06055 | UBK81754.1 | OG0001328 | CP075973.1:1405940–1406515 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtKLF50_12170 | UBK82895.1 | OG0001394 | CP075973.1:2733590–2734372 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF50_00620 | UBK80745.1 | OG0001639 | CP075973.1:137922–138698 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.