Assembly
ASM2013877v1
BioProject PRJNA707150 · BioSample SAMN18175750
GENOME-RESOLVED EVIDENCE
GCA_020138775.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3275424 bp · GC 28.500%
Completeness 96.270% · contamination 4.980%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF48_06460 | UBK87223.1 | OG0000061 | CP075979.1:1496108–1497460 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF48_00695 | UBK86111.1 | OG0000131 | CP075979.1:156082–157035 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF48_06450 | UBK87221.1 | OG0000212 | CP075979.1:1495183–1495674 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF48_12750 | UBK88412.1 | OG0000229 | CP075979.1:2870836–2871684 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF48_12140 | UBK88318.1 | OG0000234 | CP075979.1:2754692–2755870 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF48_06455 | UBK87222.1 | OG0000785 | CP075979.1:1495677–1496096 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF48_14050 | UBK88643.1 | OG0001124 | CP075979.1:3128524–3131121 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF48_12770 | UBK88416.1 | OG0001394 | CP075979.1:2874811–2875593 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF48_00655 | UBK86103.1 | OG0001639 | CP075979.1:145426–146202 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.