Assembly
ASM2013879v1
BioProject PRJNA707150 · BioSample SAMN18175734
GENOME-RESOLVED EVIDENCE
GCA_020138795.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3391937 bp · GC 28.500%
Completeness 96.990% · contamination 2.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF51_06725 | UBK90067.1 | OG0000061 | CP075981.1:1531417–1532769 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF51_00670 | UBK88922.1 | OG0000131 | CP075981.1:151060–152013 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF51_06715 | UBK90065.1 | OG0000212 | CP075981.1:1530492–1530983 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF51_12770 | UBK91197.1 | OG0000229 | CP075981.1:2850552–2851400 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF51_12165 | UBK91105.1 | OG0000234 | CP075981.1:2733299–2734477 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF51_06720 | UBK90066.1 | OG0000785 | CP075981.1:1530986–1531405 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF51_14070 | UBK91426.1 | OG0001124 | CP075981.1:3107887–3110484 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF51_01755 | UBK89120.1 | OG0001228 | CP075981.1:406102–407625 + | L-lactate permease [Clostridium perfringens] |
| crtKLF51_12790 | UBK91201.1 | OG0001394 | CP075981.1:2854527–2855309 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF51_00630 | UBK88914.1 | OG0001639 | CP075981.1:140408–141184 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.