Assembly
ASM2013921v1
BioProject PRJNA707150 · BioSample SAMN18175741
GENOME-RESOLVED EVIDENCE
GCA_020139215.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3367203 bp · GC 28.500%
Completeness 98.750% · contamination 2.450%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF37_06695 | UBK93008.1 | OG0000061 | CP075985.1:1546815–1548167 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF37_00675 | UBK91862.1 | OG0000131 | CP075985.1:152384–153337 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF37_06685 | UBK93006.1 | OG0000212 | CP075985.1:1545890–1546381 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF37_13010 | UBK94190.1 | OG0000229 | CP075985.1:2902421–2903269 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF37_12400 | UBK94096.1 | OG0000234 | CP075985.1:2784420–2785598 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF37_06690 | UBK93007.1 | OG0000785 | CP075985.1:1546384–1546803 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF37_14310 | UBK94419.1 | OG0001124 | CP075985.1:3159803–3162400 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF37_01850 | UBK92081.1 | OG0001228 | CP075985.1:425926–427449 + | L-lactate permease [Clostridium perfringens] |
| crtKLF37_13030 | UBK94194.1 | OG0001394 | CP075985.1:2906396–2907178 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF37_00635 | UBK91854.1 | OG0001639 | CP075985.1:141732–142508 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.