Assembly
ASM2013923v1
BioProject PRJNA707150 · BioSample SAMN18175744
GENOME-RESOLVED EVIDENCE
GCA_020139235.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3440919 bp · GC 28.500%
Completeness 97.920% · contamination 3.580%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF49_06680 | UBK95931.1 | OG0000061 | CP075988.1:1537916–1539268 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF49_00680 | UBK94789.1 | OG0000131 | CP075988.1:153812–154765 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF49_06670 | UBK95929.1 | OG0000212 | CP075988.1:1536991–1537482 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF49_12690 | UBK97067.1 | OG0000229 | CP075988.1:2847177–2848025 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF49_12080 | UBK96972.1 | OG0000234 | CP075988.1:2728694–2729872 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF49_06675 | UBK95930.1 | OG0000785 | CP075988.1:1537485–1537904 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF49_14085 | UBK97314.1 | OG0001124 | CP075988.1:3125069–3127666 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF49_01765 | UBK94989.1 | OG0001228 | CP075988.1:408448–409971 + | L-lactate permease [Clostridium perfringens] |
| crtKLF49_12710 | UBK97071.1 | OG0001394 | CP075988.1:2851152–2851934 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF49_00640 | UBK94781.1 | OG0001639 | CP075988.1:143160–143936 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.