Assembly
ASM2013925v1
BioProject PRJNA707150 · BioSample SAMN18175743
GENOME-RESOLVED EVIDENCE
GCA_020139255.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3589956 bp · GC 28.500%
Completeness 96.540% · contamination 8.990%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF26_06980 | UBK98960.1 | OG0000061 | CP075992.1:1599918–1601270 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF26_00780 | UBK97791.1 | OG0000131 | CP075992.1:167189–168142 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF26_06970 | UBK98958.1 | OG0000212 | CP075992.1:1598993–1599484 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF26_13770 | UBL00221.1 | OG0000229 | CP075992.1:3049126–3049974 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF26_13155 | UBL00126.1 | OG0000234 | CP075992.1:2932632–2933810 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF26_06975 | UBK98959.1 | OG0000785 | CP075992.1:1599487–1599906 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF26_15075 | UBL00450.1 | OG0001124 | CP075992.1:3306610–3309207 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF26_13790 | UBL00225.1 | OG0001394 | CP075992.1:3053100–3053882 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF26_00725 | UBK97780.1 | OG0001639 | CP075992.1:153455–154231 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.