Assembly
ASM2013927v1
BioProject PRJNA707150 · BioSample SAMN18175742
GENOME-RESOLVED EVIDENCE
GCA_020139275.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3477910 bp · GC 28.500%
Completeness 97.500% · contamination 3.420%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF33_06595 | UBL05030.1 | OG0000061 | CP076000.1:1524363–1525715 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF33_00680 | UBL03901.1 | OG0000131 | CP076000.1:153812–154765 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF33_06585 | UBL05028.1 | OG0000212 | CP076000.1:1523438–1523929 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF33_12925 | UBL06219.1 | OG0000229 | CP076000.1:2898046–2898894 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF33_12315 | UBL06124.1 | OG0000234 | CP076000.1:2779563–2780741 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF33_06590 | UBL05029.1 | OG0000785 | CP076000.1:1523932–1524351 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF33_14300 | UBL06462.1 | OG0001124 | CP076000.1:3172891–3175488 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPKLF33_01775 | UBL04103.1 | OG0001228 | CP076000.1:409634–411157 + | L-lactate permease [Clostridium perfringens] |
| crtKLF33_12945 | UBL06223.1 | OG0001394 | CP076000.1:2902021–2902803 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtKLF33_00640 | UBL03893.1 | OG0001639 | CP076000.1:143160–143936 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.