Assembly
ASM2013929v1
BioProject PRJNA707150 · BioSample SAMN18175726
GENOME-RESOLVED EVIDENCE
GCA_020139295.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3076656 bp · GC 28.000%
Completeness 95.350% · contamination 1.890%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKLF39_04410 | UBL07600.1 | OG0000061 | CP076004.1:1022615–1023967 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhKLF39_00590 | UBL06912.1 | OG0000131 | CP076004.1:130461–131414 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBKLF39_04420 | UBL07602.1 | OG0000212 | CP076004.1:1024401–1024892 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdKLF39_11705 | UBL08915.1 | OG0000229 | CP076004.1:2569555–2570403 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlKLF39_11135 | UBL08831.1 | OG0000234 | CP076004.1:2458122–2459300 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZKLF39_04415 | UBL07601.1 | OG0000785 | CP076004.1:1023979–1024398 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEKLF39_12995 | UBL09146.1 | OG0001124 | CP076004.1:2829660–2832257 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtKLF39_11725 | UBL08919.1 | OG0001394 | CP076004.1:2573530–2574312 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.