Assembly
ASM2018143v1
BioProject PRJNA747117 · BioSample SAMN21163588
GENOME-RESOLVED EVIDENCE
GCA_020181435.1
Anaerostipes caccae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3284789 bp · GC 44.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 3/3 | 1.000 | Complete marker set |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_009289956.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 143.500 / 0.98800 | Annotation: gene_symbol |
| bcdWP_006566830.1 · acyl-CoA dehydrogenase family protein | Medium | Approved candidateContext-supported Bcd candidate: calibrated profile hit co-localized with independently approved EtfA and EtfB within six CDS positions. | 462.200 / 0.99500 | Annotation: bcd_etfAB_neighborhood |
| coatWP_006568737.1 · CoA transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 249.700 / 0.97700 | Annotation: specific_product_name |
| coatWP_009289219.1 · 3-oxoacid CoA-transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 93.700 / 0.67300 | Bridge orthogroup OG0000263 |
| crtWP_006565766.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 345.900 / 0.98500 | Bridge orthogroup OG0002531 |
| etfAWP_009289556.1 · electron transfer flavoprotein subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 459.000 / 0.97600 | Bridge orthogroup OG0002903 |
| etfBWP_009289555.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 354.800 / 1.00000 | Bridge orthogroup OG0002348 |
| etfBWP_009290116.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 344.700 / 1.00000 | Bridge orthogroup OG0001139 |
| fabDWP_009289958.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 374.200 / 0.97500 | Annotation: gene_symbol |
| fabFWP_006568465.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 588.800 / 0.99300 | Annotation: gene_symbol |
| fabGWP_009289957.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 279.300 / 0.98800 | Bridge orthogroup OG0000008 |
| fabZWP_006568467.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 186.900 / 0.76000 | Bridge orthogroup OG0000074 |
| lctPWP_009289550.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 715.400 / 0.99200 | Bridge orthogroup OG0000731 |
| rnfAWP_006567153.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 280.100 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_006567152.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 303.800 / 0.92900 | Bridge orthogroup OG0001404 |
| rnfCWP_009289780.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 374.500 / 0.74400 | Bridge orthogroup OG0001114 |
| rnfDWP_009289779.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 350.300 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_006567154.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 284.500 / 0.96200 | Bridge orthogroup OG0001153 |
| accCWP_009289955.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 705.100 / 0.99600 | Profile only |
| accCWP_022260847.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 500.700 / 0.98700 | Profile only |
| bcdWP_009290555.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 605.200 / 1.00000 | Profile only |
| bcdWP_009288930.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 575.100 / 0.99700 | Profile only |
| bcdWP_006568276.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 559.300 / 1.00000 | Profile only |
| bcdWP_006565979.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 550.700 / 0.99500 | Profile only |
| bcdWP_009288831.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 526.900 / 1.00000 | Profile only |
| bcdWP_009290115.1 · acryloyl-CoA reductase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 518.200 / 0.99700 | Profile only |
| crtWP_009288832.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 368.400 / 0.98800 | Annotation: specific_product_name |
| crtWP_006568735.1 · enoyl-CoA hydratase/isomerase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 196.600 / 1.00000 | Annotation: specific_product_name |
| etfAWP_009290117.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 460.100 / 0.98200 | Profile only |
| etfAWP_009288892.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 442.900 / 0.97300 | Profile only |
| etfAWP_006565762.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 420.800 / 0.98800 | Profile only |
| etfAWP_009289553.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 394.900 / 0.99700 | Profile only |
| etfAWP_009288835.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 275.300 / 0.96100 | Profile only |
| etfBWP_009288893.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 346.800 / 1.00000 | Profile only |
| etfBWP_006565763.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 323.500 / 1.00000 | Profile only |
| etfBWP_006566831.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 261.800 / 0.99600 | Profile only |
| fabGWP_006567687.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 217.600 / 0.99200 | Profile only |
| fabGWP_009291244.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 210.500 / 0.99200 | Profile only |
| fabGWP_009289909.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.300 / 0.96000 | Profile only |
| fabGWP_009290141.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 193.600 / 0.99200 | Profile only |
| fabGWP_006568923.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.700 / 0.98400 | Profile only |
| fabGWP_009289005.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 189.700 / 0.98000 | Profile only |
| fabGWP_039930519.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 185.400 / 0.97200 | Profile only |
| fabGWP_009290903.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.900 / 0.98000 | Profile only |
| fabGWP_225103691.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 182.500 / 0.97200 | Profile only |
| fabGWP_006567364.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 91.200 / 0.85900 | Bridge orthogroup OG0000242 |
| fabHWP_006567369.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 304.600 / 0.99100 | Profile only |
| fabLWP_009289957.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 232.100 / 0.97200 | Profile only |
| fabLWP_009291244.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.400 / 0.96800 | Profile only |
| fabLWP_009290903.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.500 / 0.98800 | Profile only |
| fabLWP_006567687.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 177.600 / 0.97200 | Profile only |
| fabLWP_006568923.1 · 7alpha-hydroxysteroid dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.100 / 0.96800 | Profile only |
| fabLWP_009289909.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.100 / 0.95200 | Profile only |
| fabLWP_009290141.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 162.000 / 0.98000 | Profile only |
| fabLWP_039930519.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 157.900 / 0.98800 | Profile only |
| fabLWP_225103691.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.300 / 0.98800 | Profile only |
| fabLWP_009289005.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 147.900 / 0.98800 | Profile only |
| hbdWP_009290554.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 425.300 / 0.98900 | Profile only |
| ldhWP_009289417.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.700 / 0.98400 | Profile only |
| ldhWP_009290398.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 346.500 / 0.99100 | Profile only |
| thlWP_039930536.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 602.300 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.