Assembly
ASM2018151v1
BioProject PRJNA747117 · BioSample SAMN21163591
GENOME-RESOLVED EVIDENCE
GCA_020181515.1
Megasphaera massiliensis · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2610024 bp · GC 50.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| etfBWP_044503461.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 337.500 / 1.00000 | Bridge orthogroup OG0001139 |
| etfBWP_225068524.1 · electron transfer flavoprotein subunit beta/FixA family protein | High | Approved candidatestrong profile and bridge orthogroup support | 240.500 / 0.98500 | Bridge orthogroup OG0002348 |
| fabDWP_225070129.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 344.400 / 0.98100 | Annotation: gene_symbol |
| fabFWP_225069988.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 606.200 / 0.99300 | Annotation: gene_symbol |
| fabGWP_044504500.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 274.400 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_044504526.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 144.000 / 0.75400 | Bridge orthogroup OG0000074 |
| hbdWP_225068763.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 301.800 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_225070140.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 624.600 / 0.98800 | Bridge orthogroup OG0000731 |
| lctPWP_225068970.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 559.600 / 0.98000 | Bridge orthogroup OG0000731 |
| rnfAWP_154254092.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 280.000 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_044504612.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 303.200 / 0.93900 | Bridge orthogroup OG0001404 |
| rnfCWP_044504622.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 406.900 / 0.76900 | Bridge orthogroup OG0001114 |
| rnfDWP_044504620.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 484.000 / 0.96500 | Bridge orthogroup OG0001182 |
| rnfEWP_044504616.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 304.400 / 0.98600 | Bridge orthogroup OG0001153 |
| rnfGWP_044504618.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 186.600 / 0.91800 | Bridge orthogroup OG0001292 |
| thlWP_062412290.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 625.300 / 0.99700 | Bridge orthogroup OG0005114 |
| thlWP_044504405.1 · acetyl-CoA C-acetyltransferase | High | Approved candidatestrong profile and bridge orthogroup support | 574.200 / 0.99700 | Bridge orthogroup OG0005114 |
| accCWP_225068957.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 518.700 / 0.98700 | Profile only |
| bcdWP_044503460.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 520.000 / 1.00000 | Profile only |
| bcdWP_044503320.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 511.800 / 1.00000 | Profile only |
| bcdWP_065359965.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 506.000 / 1.00000 | Profile only |
| bcdWP_044502857.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 504.800 / 1.00000 | Profile only |
| bcdWP_044504204.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 461.300 / 0.99500 | Profile only |
| bcdWP_225068932.1 · acyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 444.900 / 0.99200 | Profile only |
| crtWP_044503054.1 · short-chain-enoyl-CoA hydratase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 381.000 / 1.00000 | Annotation: specific_product_name |
| crtWP_044503321.1 · enoyl-CoA hydratase-related protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 376.500 / 1.00000 | Annotation: specific_product_name |
| etfAWP_065359540.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 440.400 / 0.99400 | Profile only |
| etfAWP_225069590.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 330.700 / 0.97600 | Profile only |
| etfAWP_225068523.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 271.900 / 0.96400 | Profile only |
| etfBWP_044504004.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 251.400 / 0.99200 | Profile only |
| fabGWP_225068681.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 240.400 / 0.99600 | Profile only |
| fabGWP_225068731.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.900 / 0.98400 | Profile only |
| fabGWP_225069658.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.200 / 0.96400 | Profile only |
| fabGWP_225068366.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 167.400 / 0.98000 | Profile only |
| fabGWP_225069706.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.500 / 0.97600 | Profile only |
| fabGWP_225069058.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 114.100 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_225069989.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 325.900 / 0.98500 | Profile only |
| fabKWP_225069317.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 254.100 / 0.94900 | Profile only |
| fabKWP_176698822.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 225.300 / 0.94300 | Profile only |
| fabLWP_044504500.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 235.800 / 0.97600 | Profile only |
| fabLWP_225068681.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.100 / 0.99200 | Profile only |
| fabLWP_225068731.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 175.100 / 0.97200 | Profile only |
| fabLWP_225068366.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 173.800 / 0.98000 | Profile only |
| fabLWP_225069658.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.800 / 0.96000 | Profile only |
| fabLWP_225069706.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 141.000 / 0.90100 | Profile only |
| hbdWP_044503055.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 403.300 / 0.99300 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.