Assembly
ASM2073570v1
BioProject PRJNA231221 · BioSample SAMN22091678
GENOME-RESOLVED EVIDENCE
GCA_020735705.1
Coprococcus eutactus ATCC 27759 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3113335 bp · GC 43.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 3/6 | 0.500 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| crtWP_004852940.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 348.300 / 0.96500 | Bridge orthogroup OG0002531 |
| fabDWP_004852018.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 348.100 / 0.96500 | Annotation: gene_symbol |
| fabFWP_004852266.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 566.300 / 0.99300 | Annotation: gene_symbol |
| fabFWP_044998120.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 549.300 / 0.99300 | Annotation: gene_symbol |
| fabGWP_004852016.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 264.300 / 0.98800 | Bridge orthogroup OG0000008 |
| rnfAWP_004853810.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 266.500 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_004853811.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 297.900 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_004853807.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 369.200 / 0.73700 | Bridge orthogroup OG0001114 |
| accAWP_004852264.1 · acetyl-CoA carboxylase carboxyl transferase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 375.100 / 0.95600 | Profile only |
| bcdWP_004852934.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 581.300 / 1.00000 | Profile only |
| etfAWP_004852932.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 421.300 / 0.98200 | Profile only |
| etfBWP_004852933.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 316.400 / 1.00000 | Profile only |
| fabGWP_227909664.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.800 / 0.95200 | Profile only |
| fabGWP_004851555.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 134.400 / 0.98000 | Profile only |
| fabGWP_004851050.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 115.200 / 0.81000 | Bridge orthogroup OG0000242 |
| fabHWP_004852261.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 307.900 / 0.99100 | Profile only |
| fabLWP_227909664.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.000 / 0.95200 | Profile only |
| fabLWP_004851555.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 119.200 / 0.98000 | Profile only |
| hbdWP_004852936.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 393.300 / 0.98600 | Profile only |
| ldhWP_021739968.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.800 / 0.98700 | Profile only |
| thlWP_044998303.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 562.700 / 0.99200 | Profile only |
| fabLWP_004852016.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 211.700 / 0.98000 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.