Assembly
ASM2081989v2
BioProject PRJNA776833 · BioSample SAMN22819210
GENOME-RESOLVED EVIDENCE
GCA_020819895.2
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3334396 bp · GC 28.500%
Completeness 94.430% · contamination 3.390%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCLMS42_005045 | WVL77772.1 | OG0000061 | CP143271.1:1118334–1119686 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhLMS42_010725 | WVL76116.1 | OG0000131 | CP143271.1:2420362–2421315 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBLMS42_005055 | WVL77774.1 | OG0000212 | CP143271.1:1120120–1120611 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdLMS42_013475 | WVL76591.1 | OG0000229 | CP143271.1:2979967–2980815 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlLMS42_014075 | WVL76684.1 | OG0000234 | CP143271.1:3096523–3097701 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZLMS42_005050 | WVL77773.1 | OG0000785 | CP143271.1:1119698–1120117 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhELMS42_012165 | WVL76358.1 | OG0001124 | CP143271.1:2718355–2720952 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPLMS42_009655 | WVL75921.1 | OG0001228 | CP143271.1:2175484–2177007 - | L-lactate permease [Clostridium perfringens] |
| rnfALMS42_005095 | WVL77782.1 | OG0001328 | CP143271.1:1126677–1127252 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtLMS42_013455 | WVL76587.1 | OG0001394 | CP143271.1:2976058–2976840 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtLMS42_010765 | WVL76124.1 | OG0001639 | CP143271.1:2431157–2431933 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.