Assembly
ASM2091172v1
BioProject PRJNA549513 · BioSample SAMN19659030
GENOME-RESOLVED EVIDENCE
GCA_020911725.1
Clostridium cadaveris · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3625784 bp · GC 31.500%
Completeness 99.380% · contamination 0.310%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKQH81_07345 | UFH66324.1 | OG0000061 | CP076620.1:1585116–1586468 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium cadaveris] |
| ldhKQH81_03940 | UFH65697.1 | OG0000131 | CP076620.1:861219–862157 + | L-lactate dehydrogenase [Clostridium cadaveris] |
| accBKQH81_07335 | UFH66322.1 | OG0000212 | CP076620.1:1584173–1584679 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium cadaveris] |
| hbdKQH81_14130 | UFH64405.1 | OG0000229 | CP076620.1:2939229–2940077 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium cadaveris] |
| thlKQH81_13395 | UFH64297.1 | OG0000234 | CP076620.1:2814004–2815188 - | acetyl-CoA C-acetyltransferase [Clostridium cadaveris] |
| fabZKQH81_07340 | UFH66323.1 | OG0000785 | CP076620.1:1584681–1585112 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium cadaveris] |
| adhEKQH81_09765 | UFH63659.1 | OG0001124 | CP076620.1:2056616–2059234 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium cadaveris] |
| lctPKQH81_05585 | UFH66001.1 | OG0001228 | CP076620.1:1218607–1220157 + | L-lactate permease [Clostridium cadaveris] |
| rnfAKQH81_03000 | UFH65529.1 | OG0001328 | CP076620.1:673276–673854 + | electron transport complex protein RnfA [Clostridium cadaveris] |
| crtKQH81_14150 | UFH64409.1 | OG0001394 | CP076620.1:2943133–2943915 - | short-chain-enoyl-CoA hydratase [Clostridium cadaveris] |
| crtKQH81_11445 | UFH63957.1 | OG0001639 | CP076620.1:2405257–2406051 - | enoyl-CoA hydratase/isomerase family protein [Clostridium cadaveris] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.