Assembly
ASM2149597v1
BioProject PRJNA796196 · BioSample SAMN24823988
GENOME-RESOLVED EVIDENCE
GCA_021495975.1
Clostridium sporogenes · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4154726 bp · GC 28.000%
Completeness 96.640% · contamination 1.630%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCL0894_18985 | UJA32131.1 | OG0000061 | CP090904.1:4106295–4107641 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sporogenes] |
| ldhL0894_07675 | UJA33604.1 | OG0000131 | CP090904.1:1684302–1685258 - | L-lactate dehydrogenase [Clostridium sporogenes] |
| accBL0894_18995 | UJA32133.1 | OG0000212 | CP090904.1:4108126–4108602 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sporogenes] |
| hbdL0894_16615 | UJA31710.1 | OG0000229 | CP090904.1:3634574–3635404 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sporogenes] |
| thlL0894_16610 | UJA31709.1 | OG0000234 | CP090904.1:3633371–3634549 - | acetyl-CoA C-acetyltransferase [Clostridium sporogenes] |
| fabZL0894_18990 | UJA32132.1 | OG0000785 | CP090904.1:4107672–4108106 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sporogenes] |
| adhEL0894_01845 | UJA32499.1 | OG0001124 | CP090904.1:391514–394102 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sporogenes] |
| rnfAL0894_01995 | UJA32529.1 | OG0001328 | CP090904.1:429306–429884 + | electron transport complex protein RnfA [Clostridium sporogenes] |
| crtL0894_16620 | UJA31711.1 | OG0001639 | CP090904.1:3635424–3636206 - | short-chain-enoyl-CoA hydratase [Clostridium sporogenes] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.