Assembly
ASM2217466v1
BioProject PRJNA733006 · BioSample SAMN19374020
GENOME-RESOLVED EVIDENCE
GCA_022174665.1
Eubacterium sp. MSJ-33 · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2908239 bp · GC 42.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 4/6 | 0.667 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_238298970.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 376.100 / 0.97400 | Bridge orthogroup OG0001120 |
| accDWP_238298968.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 378.100 / 0.91500 | Bridge orthogroup OG0000844 |
| crtWP_238299554.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 351.600 / 0.96900 | Bridge orthogroup OG0002531 |
| fabFWP_238298973.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 606.300 / 0.99300 | Annotation: gene_symbol |
| fabGWP_238298972.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 270.700 / 0.99600 | Bridge orthogroup OG0000008 |
| fabZWP_118373356.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 180.900 / 0.76000 | Bridge orthogroup OG0000074 |
| fabZWP_177985754.1 · 3-hydroxyacyl-ACP dehydratase FabZ | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 82.400 / 0.74300 | Bridge orthogroup OG0000074 |
| rnfAWP_177969572.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 276.200 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_238298370.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 310.900 / 0.92500 | Bridge orthogroup OG0001404 |
| rnfCWP_238298368.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 377.700 / 0.73500 | Bridge orthogroup OG0001114 |
| rnfEWP_177969573.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 258.700 / 0.78800 | Bridge orthogroup OG0001153 |
| thlWP_238299884.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 285.000 / 0.99200 | Bridge orthogroup OG0000010 |
| bcdWP_238299552.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 580.000 / 1.00000 | Profile only |
| etfAWP_021986153.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 415.900 / 0.98200 | Profile only |
| etfBWP_021986152.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 316.600 / 1.00000 | Profile only |
| fabGWP_238299657.1 · 3-oxoacyl-ACP reductase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 239.000 / 0.97200 | Annotation: specific_product_name |
| fabGWP_238297270.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 204.900 / 0.98400 | Profile only |
| fabGWP_238297832.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 194.300 / 0.96800 | Profile only |
| fabGWP_238298111.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 126.900 / 0.97200 | Profile only |
| fabGWP_238299124.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 108.300 / 0.77400 | Bridge orthogroup OG0000242 |
| fabHWP_178017164.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 275.800 / 0.98500 | Profile only |
| fabKWP_177969620.1 · DUF561 domain-containing protein | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 455.200 / 0.96800 | Profile only |
| fabLWP_238299657.1 · 3-oxoacyl-ACP reductase family protein | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 245.600 / 0.99200 | Profile only |
| fabLWP_238298972.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 234.500 / 0.98800 | Profile only |
| fabLWP_238297270.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 165.500 / 0.96800 | Profile only |
| fabLWP_238297832.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 137.900 / 0.95600 | Profile only |
| fabLWP_238298111.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 113.400 / 0.98000 | Profile only |
| hbdWP_238299553.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 390.900 / 0.98600 | Profile only |
| ldhWP_238298069.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 413.100 / 0.98700 | Profile only |
| thlWP_021986148.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 564.900 / 0.99200 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.