Assembly
ASM2226755v1
BioProject PRJNA723451 · BioSample SAMN18818504
GENOME-RESOLVED EVIDENCE
GCA_022267555.1
Proteiniphilum propionicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3906720 bp · GC 41.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 0/4 | 0.000 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| fabFWP_238868180.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 556.300 / 0.99800 | Annotation: gene_symbol |
| fabGWP_238866856.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 239.800 / 0.98800 | Bridge orthogroup OG0000008 |
| fabHWP_238866074.1 · 3-oxoacyl-ACP synthase III family protein | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 191.400 / 0.98500 | Annotation: specific_product_name |
| fabZWP_238841471.1 · bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase | High | Approved candidatestrong profile and bridge orthogroup support | 108.000 / 0.75400 | Bridge orthogroup OG0000074 |
| rnfAWP_238841476.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 261.500 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfAWP_238867334.1 · NADH:ubiquinone reductase (Na(+)-transporting) subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 175.800 / 0.99000 | Bridge orthogroup OG0001169 |
| rnfBWP_238841481.1 · Fe-S cluster domain-containing protein | High | Approved candidatestrong profile and bridge orthogroup support | 268.200 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_238841480.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 371.300 / 0.75100 | Bridge orthogroup OG0001114 |
| rnfDWP_238841479.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 346.700 / 0.94100 | Bridge orthogroup OG0001182 |
| rnfEWP_238841477.1 · RnfABCDGE type electron transport complex subunit E | High | Approved candidatestrong profile and bridge orthogroup support | 276.300 / 0.95200 | Bridge orthogroup OG0001153 |
| rnfEWP_238867336.1 · NADH:ubiquinone reductase (Na(+)-transporting) subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 176.500 / 0.89400 | Bridge orthogroup OG0001153 |
| accBWP_238866165.1 · biotin/lipoyl-containing protein | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 70.200 / 0.59300 | Profile only |
| accBWP_238841587.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 71.700 / 0.51200 | Bridge orthogroup OG0000034 |
| crtWP_238869184.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.500 / 0.98800 | Profile only |
| etfAWP_238866987.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 357.200 / 0.96700 | Profile only |
| etfBWP_238866989.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 242.900 / 0.99600 | Profile only |
| fabGWP_238869401.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 209.500 / 0.98400 | Profile only |
| fabGWP_238868414.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 171.900 / 0.97600 | Profile only |
| fabGWP_238841524.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 161.600 / 0.99200 | Profile only |
| fabGWP_238866075.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 153.300 / 0.98400 | Profile only |
| fabGWP_238841684.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 152.500 / 0.92700 | Profile only |
| fabGWP_238841572.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 132.800 / 0.98400 | Profile only |
| fabGWP_238865773.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.600 / 0.87500 | Bridge orthogroup OG0000242 |
| fabHWP_238841695.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 261.300 / 0.99100 | Profile only |
| fabKWP_238868188.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 368.000 / 0.98400 | Profile only |
| fabLWP_238866856.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 192.500 / 0.98400 | Profile only |
| fabLWP_238869401.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 172.800 / 0.97600 | Profile only |
| fabLWP_238868414.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.700 / 0.96800 | Profile only |
| fabLWP_238866075.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.200 / 0.98000 | Profile only |
| fabLWP_238841524.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 148.400 / 0.98800 | Profile only |
| fabLWP_238841684.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 139.800 / 0.89700 | Profile only |
| fabLWP_238865773.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 110.100 / 0.88100 | Profile only |
| hbdWP_238867867.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 199.400 / 0.98600 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.