Assembly
ASM2284573v1
BioProject PRJDB11902 · BioSample SAMD00389861
GENOME-RESOLVED EVIDENCE
GCA_022845735.1
[Clostridium] innocuum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 5051129 bp · GC 43.500%
Completeness 87.920% · contamination 2.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 1/3 | 0.333 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 2/8 | 0.250 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 4/4 | 1.000 | Complete marker set |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| bcd | butyryl-CoA dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| bcd2CE91St51_27450 | BDF00708.1 | OG0000034 | AP025565.1:2798290–2799429 - | butyryl-CoA dehydrogenase [[Clostridium] innocuum] |
| accCCE91St51_33280 | BDF01291.1 | OG0000061 | AP025565.1:3372978–3374345 - | acetyl-CoA carboxylase biotin carboxylase subunit [[Clostridium] innocuum] |
| ldh2_1CE91St51_36760 | BDF01639.1 | OG0000131 | AP025565.1:3709710–3710660 - | L-lactate dehydrogenase 2 [[Clostridium] innocuum] |
| ldh2_2CE91St51_36770 | BDF01640.1 | OG0000131 | AP025565.1:3710765–3711715 - | L-lactate dehydrogenase 2 [[Clostridium] innocuum] |
| accBCE91St51_33290 | BDF01292.1 | OG0000212 | AP025565.1:3374342–3374806 - | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [[Clostridium] innocuum] |
| hbdCE91St51_27420 | BDF00705.1 | OG0000229 | AP025565.1:2795516–2796355 - | 3-hydroxybutyryl-CoA dehydrogenase [[Clostridium] innocuum] |
| thlCE91St51_27460 | BDF00709.1 | OG0000234 | AP025565.1:2799772–2800980 + | acetyl-CoA acetyltransferase [[Clostridium] innocuum] |
| thlCE91St51_27470 | BDF00710.1 | OG0000234 | AP025565.1:2801177–2802382 + | acetyl-CoA acetyltransferase [[Clostridium] innocuum] |
| crtCE91St51_27410 | BDF00704.1 | OG0011992 | AP025565.1:2794636–2795415 - | short-chain-enoyl-CoA hydratase [[Clostridium] innocuum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.