Assembly
ASM2300826v1
BioProject PRJNA755324 · BioSample SAMN20819815
GENOME-RESOLVED EVIDENCE
GCA_023008265.1
[Clostridium] innocuum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4344781 bp · GC 44.000%
Completeness 87.920% · contamination 2.800%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 2 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCK5I27_04935 | UOX51327.1 | OG0000061 | CP094942.1:990730–992097 + | acetyl-CoA carboxylase biotin carboxylase subunit [[Clostridium] innocuum] |
| ldhK5I27_04540 | UOX51250.1 | OG0000131 | CP094942.1:902046–902996 + | L-lactate dehydrogenase [[Clostridium] innocuum] |
| ldhK5I27_04545 | UOX51251.1 | OG0000131 | CP094942.1:903101–904051 + | L-lactate dehydrogenase [[Clostridium] innocuum] |
| accBK5I27_04930 | UOX51326.1 | OG0000212 | CP094942.1:990269–990733 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [[Clostridium] innocuum] |
| thlK5I27_07725 | UOX51861.1 | OG0000234 | CP094942.1:1541343–1542548 - | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| thlK5I27_07730 | UOX51862.1 | OG0000234 | CP094942.1:1542745–1543953 - | acetyl-CoA C-acetyltransferase [[Clostridium] innocuum] |
| fabZK5I27_04980 | UOX51336.1 | OG0000785 | CP094942.1:999853–1000287 + | 3-hydroxyacyl-ACP dehydratase FabZ [[Clostridium] innocuum] |
| crtK5I27_07755 | UOX51867.1 | OG0011992 | CP094942.1:1548310–1549089 + | short-chain-enoyl-CoA hydratase [[Clostridium] innocuum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.