Assembly
ASM2370022v1
BioProject PRJNA842251 · BioSample SAMN28656641
GENOME-RESOLVED EVIDENCE
GCA_023700225.1
Acetobacterium wieringae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3711234 bp · GC 44.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 2/3 | 0.667 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 6/6 | 1.000 | Complete marker set |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_148637122.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 398.900 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_070372244.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 134.800 / 0.97500 | Annotation: gene_symbol |
| accCWP_070372246.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 646.200 / 0.99300 | Annotation: gene_symbol |
| accDWP_070372247.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 391.700 / 0.97300 | Bridge orthogroup OG0000844 |
| coatWP_250933405.1 · 3-oxoacid CoA-transferase subunit B | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 279.300 / 0.94500 | Annotation: specific_product_name |
| coatWP_148636707.1 · CoA transferase subunit A | Medium | Approved candidatestrong profile plus independent annotation support: specific_product_name | 90.100 / 0.79300 | Bridge orthogroup OG0000263 |
| crtWP_250934243.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 344.900 / 0.98500 | Bridge orthogroup OG0002531 |
| etfAWP_250933635.1 · lactate dehydrogenase subunit LctC | High | Approved candidatestrong profile and bridge orthogroup support | 428.600 / 0.97000 | Bridge orthogroup OG0002903 |
| etfBWP_070370461.1 · lactate dehydrogenase subunit LctB | High | Approved candidatestrong profile and bridge orthogroup support | 326.000 / 0.99600 | Bridge orthogroup OG0002348 |
| fabFWP_250936187.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 560.000 / 0.98600 | Annotation: gene_symbol |
| fabGWP_250936185.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 237.400 / 0.99200 | Bridge orthogroup OG0000008 |
| fabKWP_070372240.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 474.400 / 0.99400 | Annotation: gene_symbol |
| fabZWP_250936189.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 97.700 / 0.74900 | Bridge orthogroup OG0000074 |
| hbdWP_070370832.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 224.100 / 0.98900 | Bridge orthogroup OG0000153 |
| lctPWP_250933631.1 · L-lactate permease | High | Approved candidatestrong profile and bridge orthogroup support | 771.100 / 0.99200 | Bridge orthogroup OG0000731 |
| rnfAWP_148636420.1 · electron transport complex subunit RsxA | High | Approved candidatestrong profile and bridge orthogroup support | 292.800 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfAWP_070370900.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 289.800 / 1.00000 | Bridge orthogroup OG0001169 |
| rnfBWP_250934042.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 341.000 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfBWP_250932859.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 305.000 / 0.93600 | Bridge orthogroup OG0001404 |
| rnfCWP_250934044.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 426.100 / 0.74800 | Bridge orthogroup OG0001114 |
| rnfCWP_250932864.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 388.000 / 0.74600 | Bridge orthogroup OG0001114 |
| rnfCWP_250933569.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 344.600 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_070370897.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 557.300 / 0.95900 | Bridge orthogroup OG0001182 |
| rnfDWP_250932863.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 378.500 / 0.95000 | Bridge orthogroup OG0001182 |
| rnfEWP_148638171.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 334.900 / 0.99000 | Bridge orthogroup OG0001153 |
| rnfEWP_250932861.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 270.000 / 0.92300 | Bridge orthogroup OG0001153 |
| rnfGWP_250934043.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 188.600 / 0.89700 | Bridge orthogroup OG0001292 |
| rnfGWP_148636419.1 · RnfABCDGE type electron transport complex subunit G | High | Approved candidatestrong profile and bridge orthogroup support | 140.700 / 0.92300 | Bridge orthogroup OG0001292 |
| accCWP_250934921.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 519.400 / 0.98700 | Profile only |
| fabGWP_250932667.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 250.100 / 1.00000 | Profile only |
| fabGWP_228883137.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 226.400 / 0.98000 | Profile only |
| fabGWP_250935237.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.600 / 0.99200 | Profile only |
| fabGWP_250934162.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 150.900 / 0.97200 | Profile only |
| fabGWP_250932920.1 · SDR family oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 142.500 / 0.81500 | Bridge orthogroup OG0000242 |
| fabGWP_250934345.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 119.100 / 0.93100 | Profile only |
| fabHWP_070372238.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 246.300 / 0.98800 | Profile only |
| fabLWP_250932667.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 197.500 / 0.96800 | Profile only |
| fabLWP_250935237.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 191.000 / 0.97600 | Profile only |
| fabLWP_228883137.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 187.300 / 0.98000 | Profile only |
| fabLWP_250934345.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.800 / 0.93700 | Profile only |
| fabLWP_250934162.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 140.300 / 0.96800 | Profile only |
| fabLWP_250932920.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 132.400 / 0.80600 | Profile only |
| rnfCWP_070371840.1 · 4Fe-4S dicluster domain-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 547.400 / 0.99100 | Profile only |
| fabLWP_250936185.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | RejectedSpecific CDD hits identify the sequence as FabG/3-oxoacyl-ACP reductase rather than FabL. | 199.600 / 0.97600 | Annotation: CDD_competing_FabG_signature |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.