Assembly
ASM2392114v1
BioProject PRJNA591366 · BioSample SAMN13380509
GENOME-RESOLVED EVIDENCE
GCA_023921145.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3428848 bp · GC 28.000%
Completeness 98.760% · contamination 0.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 2/4 | 0.500 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCGOM42_06590 | USQ64731.1 | OG0000061 | CP046515.1:1528715–1530067 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. 16K-1-R1] |
| ldhGOM42_00740 | USQ63631.1 | OG0000131 | CP046515.1:163917–164870 - | L-lactate dehydrogenase [Clostridium sp. 16K-1-R1] |
| accBGOM42_06580 | USQ64729.1 | OG0000212 | CP046515.1:1527790–1528281 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. 16K-1-R1] |
| hbdGOM42_12590 | USQ65857.1 | OG0000229 | CP046515.1:2849963–2850811 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. 16K-1-R1] |
| fabZGOM42_06585 | USQ64730.1 | OG0000785 | CP046515.1:1528284–1528703 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. 16K-1-R1] |
| adhEGOM42_13875 | USQ66084.1 | OG0001124 | CP046515.1:3107257–3109854 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium sp. 16K-1-R1] |
| lctPGOM42_01815 | USQ63828.1 | OG0001228 | CP046515.1:409909–411432 + | L-lactate permease [Clostridium sp. 16K-1-R1] |
| crtGOM42_12610 | USQ65861.1 | OG0001394 | CP046515.1:2853938–2854720 - | short-chain-enoyl-CoA hydratase [Clostridium sp. 16K-1-R1] |
| crtGOM42_00700 | USQ63623.1 | OG0001639 | CP046515.1:153253–154029 + | short-chain-enoyl-CoA hydratase [Clostridium sp. 16K-1-R1] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.