Assembly
ASM2398888v1
BioProject PRJNA406956 · BioSample SAMN29228908
GENOME-RESOLVED EVIDENCE
GCA_023988885.1
Clostridium septicum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3380543 bp · GC 28.000%
Completeness 99.380% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 2 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNH397_09530 | USR99746.1 | OG0000061 | CP099799.1:1948245–1949597 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium septicum] |
| ldhNH397_08055 | USS02355.1 | OG0000131 | CP099799.1:1629816–1630766 - | L-lactate dehydrogenase [Clostridium septicum] |
| ldhNH397_15165 | USS00780.1 | OG0000131 | CP099799.1:3210513–3211463 - | L-lactate dehydrogenase [Clostridium septicum] |
| accBNH397_09540 | USR99748.1 | OG0000212 | CP099799.1:1950032–1950526 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium septicum] |
| hbdNH397_01915 | USS01244.1 | OG0000229 | CP099799.1:390813–391661 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium septicum] |
| thlNH397_02490 | USS01329.1 | OG0000234 | CP099799.1:495306–496487 + | acetyl-CoA C-acetyltransferase [Clostridium septicum] |
| fabZNH397_09535 | USR99747.1 | OG0000785 | CP099799.1:1949607–1950029 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium septicum] |
| adhENH397_09510 | USR99742.1 | OG0001124 | CP099799.1:1942951–1945575 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium septicum] |
| lctPNH397_14140 | USS00605.1 | OG0001228 | CP099799.1:2971932–2973452 - | L-lactate permease [Clostridium septicum] |
| crtNH397_01895 | USS01240.1 | OG0001394 | CP099799.1:386864–387646 + | short-chain-enoyl-CoA hydratase [Clostridium septicum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.