Assembly
ASM2439987v1
BioProject PRJNA632418 · BioSample SAMN14908714
GENOME-RESOLVED EVIDENCE
GCA_024399875.1
Clostridium butyricum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4697138 bp · GC 28.500%
Completeness 95.390% · contamination 2.480%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 4 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCHNS01_13115 | UTY53989.1 | OG0000061 | CP053374.1:2773547–2774899 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium butyricum] |
| ldhHNS01_10175 | UTY53437.1 | OG0000131 | CP053374.1:2153084–2154037 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHNS01_13470 | UTY54058.1 | OG0000131 | CP053374.1:2851395–2852348 - | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHNS01_15005 | UTY54344.1 | OG0000131 | CP053374.1:3190665–3191603 + | L-lactate dehydrogenase [Clostridium butyricum] |
| ldhHNS01_18465 | UTY55103.1 | OG0000131 | CP053375.1:60883–61827 + | L-lactate dehydrogenase (plasmid) [Clostridium butyricum] |
| accBHNS01_13125 | UTY53991.1 | OG0000212 | CP053374.1:2775340–2775846 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium butyricum] |
| hbdHNS01_01745 | UTY51903.1 | OG0000229 | CP053374.1:369244–370092 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium butyricum] |
| thlHNS01_02355 | UTY51991.1 | OG0000234 | CP053374.1:482504–483685 + | acetyl-CoA C-acetyltransferase [Clostridium butyricum] |
| fabZHNS01_13120 | UTY53990.1 | OG0000785 | CP053374.1:2774908–2775336 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium butyricum] |
| adhEHNS01_17535 | UTY54808.1 | OG0001124 | CP053374.1:3814065–3816695 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium butyricum] |
| lctPHNS01_10630 | UTY53524.1 | OG0001228 | CP053374.1:2261290–2262831 - | L-lactate permease [Clostridium butyricum] |
| crtHNS01_01725 | UTY51899.1 | OG0001394 | CP053374.1:365243–366028 + | short-chain-enoyl-CoA hydratase [Clostridium butyricum] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.