Assembly
ASM2449829v1
BioProject PRJNA860061 · BioSample SAMN29820939
GENOME-RESOLVED EVIDENCE
GCA_024498295.1
Thermocaproicibacter melissae · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 1960795 bp · GC 49.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 6/8 | 0.750 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accAWP_283110804.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | High | Approved candidatestrong profile and bridge orthogroup support | 386.400 / 0.95600 | Bridge orthogroup OG0001120 |
| accBWP_283111138.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 147.700 / 0.98100 | Annotation: gene_symbol |
| accCWP_283110802.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 654.700 / 0.98900 | Annotation: gene_symbol |
| accDWP_283110803.1 · acetyl-CoA carboxylase, carboxyltransferase subunit beta | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 385.700 / 0.90400 | Bridge orthogroup OG0000844 |
| crtWP_283110666.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 335.100 / 0.96500 | Bridge orthogroup OG0002531 |
| fabFWP_283110800.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 553.700 / 0.98800 | Annotation: gene_symbol |
| fabGWP_283110798.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 245.300 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_283110796.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 474.200 / 0.99400 | Annotation: gene_symbol |
| fabZWP_283110801.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 99.800 / 0.74900 | Bridge orthogroup OG0000074 |
| ldhWP_283109656.1 · L-lactate dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support | 377.700 / 0.98400 | Bridge orthogroup OG0001800 |
| fabZWP_283110078.1 · acyl-CoA dehydratase activase | Low | Excluded: low confidenceprofile hit lacks strong score and bridge orthogroup support | 71.600 / 0.93400 | Profile only |
| accBWP_283110774.1 · biotin/lipoyl-containing protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 81.500 / 0.54900 | Bridge orthogroup OG0000034 |
| bcdWP_283110667.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 626.900 / 0.99500 | Profile only |
| etfAWP_283110669.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 448.800 / 0.98800 | Profile only |
| etfBWP_283110668.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 346.800 / 0.99600 | Profile only |
| fabGWP_283110303.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 238.300 / 0.96800 | Profile only |
| fabGWP_283109671.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 211.000 / 0.98400 | Profile only |
| fabGWP_283111205.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 206.000 / 0.98800 | Profile only |
| fabGWP_283110418.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 110.700 / 0.75000 | Bridge orthogroup OG0000242 |
| fabGWP_283109911.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 102.900 / 0.82700 | Profile only |
| fabHWP_283110794.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 278.500 / 0.98500 | Profile only |
| fabKWP_283110799.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 177.200 / 0.95900 | Profile only |
| fabLWP_283110798.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 221.100 / 0.97200 | Profile only |
| fabLWP_283111205.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 188.400 / 0.99200 | Profile only |
| fabLWP_283110303.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 184.600 / 0.95600 | Profile only |
| fabLWP_283109671.1 · gluconate 5-dehydrogenase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.300 / 0.97200 | Profile only |
| hbdWP_283111134.1 · 3-hydroxybutyryl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 412.700 / 0.98200 | Profile only |
| ldhWP_283110346.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 407.400 / 0.97500 | Profile only |
| thlWP_283110665.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 595.300 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.