Assembly
ASM2459991v1
BioProject PRJNA838272 · BioSample SAMN28416506
GENOME-RESOLVED EVIDENCE
GCA_024599915.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3383309 bp · GC 28.500%
Completeness 97.710% · contamination 3.300%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNQ196_06565 | UUR82283.1 | OG0000061 | CP102311.1:1511161–1512513 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhNQ196_00670 | UUR81158.1 | OG0000131 | CP102311.1:151055–152008 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNQ196_06555 | UUR82281.1 | OG0000212 | CP102311.1:1510236–1510727 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdNQ196_12890 | UUR80677.1 | OG0000229 | CP102311.1:2878660–2879508 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlNQ196_12275 | UUR80582.1 | OG0000234 | CP102311.1:2758304–2759482 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZNQ196_06560 | UUR82282.1 | OG0000785 | CP102311.1:1510730–1511149 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhENQ196_14190 | UUR80908.1 | OG0001124 | CP102311.1:3135822–3138419 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNQ196_01790 | UUR81362.1 | OG0001228 | CP102311.1:406478–408001 + | L-lactate permease [Clostridium perfringens] |
| crtNQ196_12910 | UUR80681.1 | OG0001394 | CP102311.1:2882635–2883417 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtNQ196_00630 | UUR81150.1 | OG0001639 | CP102311.1:140436–141212 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.