Assembly
ASM2459993v1
BioProject PRJNA837767 · BioSample SAMN28230540
GENOME-RESOLVED EVIDENCE
GCA_024599935.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3309371 bp · GC 28.500%
Completeness 97.620% · contamination 2.870%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNQ193_06370 | UUR85171.1 | OG0000061 | CP102297.1:1476469–1477821 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhNQ193_00670 | UUR84080.1 | OG0000131 | CP102297.1:151323–152276 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNQ193_06360 | UUR85169.1 | OG0000212 | CP102297.1:1475544–1476035 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdNQ193_12625 | UUR83590.1 | OG0000229 | CP102297.1:2828652–2829500 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlNQ193_12015 | UUR83494.1 | OG0000234 | CP102297.1:2710853–2712031 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZNQ193_06365 | UUR85170.1 | OG0000785 | CP102297.1:1476038–1476457 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhENQ193_13995 | UUR83834.1 | OG0001124 | CP102297.1:3098324–3100921 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNQ193_01710 | UUR84272.1 | OG0001228 | CP102297.1:394946–396469 + | L-lactate permease [Clostridium perfringens] |
| crtNQ193_12645 | UUR83594.1 | OG0001394 | CP102297.1:2832627–2833409 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtNQ193_00630 | UUR84072.1 | OG0001639 | CP102297.1:140672–141448 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.