Assembly
ASM2459995v1
BioProject PRJNA838283 · BioSample SAMN28416573
GENOME-RESOLVED EVIDENCE
GCA_024599955.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3594177 bp · GC 28.500%
Completeness 96.740% · contamination 3.900%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNQ194_06620 | UUR88104.1 | OG0000061 | CP102300.1:1466951–1468303 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhNQ194_00795 | UUR87001.1 | OG0000131 | CP102300.1:169769–170722 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNQ194_06610 | UUR88102.1 | OG0000212 | CP102300.1:1466026–1466517 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdNQ194_13180 | UUR86497.1 | OG0000229 | CP102300.1:2876508–2877356 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlNQ194_12570 | UUR86403.1 | OG0000234 | CP102300.1:2760332–2761510 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZNQ194_06615 | UUR88103.1 | OG0000785 | CP102300.1:1466520–1466939 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhENQ194_14520 | UUR86730.1 | OG0001124 | CP102300.1:3139261–3141858 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNQ194_01855 | UUR87198.1 | OG0001228 | CP102300.1:411949–413472 + | L-lactate permease [Clostridium perfringens] |
| crtNQ194_13200 | UUR86501.1 | OG0001394 | CP102300.1:2880483–2881265 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtNQ194_00750 | UUR86992.1 | OG0001639 | CP102300.1:159128–159904 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.