Assembly
ASM2465284v1
BioProject PRJNA838112 · BioSample SAMN28405500
GENOME-RESOLVED EVIDENCE
GCA_024652845.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3292175 bp · GC 28.500%
Completeness 96.300% · contamination 2.440%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCNQ197_06685 | UUW67267.1 | OG0000061 | CP102420.1:1499866–1501218 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhNQ197_00670 | UUW66111.1 | OG0000131 | CP102420.1:151249–152202 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBNQ197_06675 | UUW67265.1 | OG0000212 | CP102420.1:1498941–1499432 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdNQ197_12750 | UUW65637.1 | OG0000229 | CP102420.1:2819612–2820460 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlNQ197_12140 | UUW65541.1 | OG0000234 | CP102420.1:2703437–2704615 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZNQ197_06680 | UUW67266.1 | OG0000785 | CP102420.1:1499435–1499854 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhENQ197_14050 | UUW65868.1 | OG0001124 | CP102420.1:3076883–3079480 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPNQ197_01710 | UUW66304.1 | OG0001228 | CP102420.1:396319–397842 + | L-lactate permease [Clostridium perfringens] |
| crtNQ197_12770 | UUW65641.1 | OG0001394 | CP102420.1:2823587–2824369 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtNQ197_00630 | UUW66103.1 | OG0001639 | CP102420.1:140595–141371 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.