Assembly
ASM2473056v1
BioProject PRJNA735695 · BioSample SAMN19771216
GENOME-RESOLVED EVIDENCE
GCA_024730565.1
Clostridium sp. · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3930106 bp · GC 31.500%
Completeness 98.450% · contamination 1.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCKTC92_13025 | UVE40071.1 | OG0000061 | CP077725.1:2782041–2783384 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium sp. CM027] |
| ldhKTC92_17545 | UVE40850.1 | OG0000131 | CP077725.1:3714245–3715192 + | L-lactate dehydrogenase [Clostridium sp. CM027] |
| accBKTC92_13015 | UVE40069.1 | OG0000212 | CP077725.1:2780956–2781474 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium sp. CM027] |
| hbdKTC92_10565 | UVE39681.1 | OG0000229 | CP077725.1:2244456–2245304 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium sp. CM027] |
| thlKTC92_09990 | UVE39577.1 | OG0000234 | CP077725.1:2118930–2120108 - | acetyl-CoA C-acetyltransferase [Clostridium sp. CM027] |
| fabZKTC92_13020 | UVE40070.1 | OG0000785 | CP077725.1:2781544–2781990 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium sp. CM027] |
| lctPKTC92_08295 | UVE42413.1 | OG0001228 | CP077725.1:1753372–1754895 - | L-lactate permease [Clostridium sp. CM027] |
| crtKTC92_10585 | UVE39685.1 | OG0001394 | CP077725.1:2248470–2249249 - | short-chain-enoyl-CoA hydratase [Clostridium sp. CM027] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.