Assembly
ASM2515074v1
BioProject PRJNA746600 · BioSample SAMN20222692
GENOME-RESOLVED EVIDENCE
GCA_025150745.1
Eubacterium ventriosum · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2856089 bp · GC 35.000%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 4/8 | 0.500 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 5/6 | 0.833 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| accBWP_040446358.1 · acetyl-CoA carboxylase biotin carboxyl carrier protein | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 152.100 / 0.98800 | Annotation: gene_symbol |
| crtWP_005363811.1 · enoyl-CoA hydratase-related protein | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: specific_product_name | 351.300 / 0.96900 | Bridge orthogroup OG0002531 |
| fabDWP_005360559.1 · ACP S-malonyltransferase | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 330.600 / 0.96500 | Annotation: gene_symbol |
| fabFWP_005360562.1 · beta-ketoacyl-ACP synthase II | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 585.400 / 0.99300 | Annotation: gene_symbol |
| fabGWP_040446357.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 267.200 / 0.99600 | Bridge orthogroup OG0000008 |
| fabKWP_005360557.1 · enoyl-[acyl-carrier-protein] reductase FabK | Medium | Approved candidatestrong profile plus independent annotation support: gene_symbol | 495.200 / 0.97500 | Annotation: gene_symbol |
| fabZWP_005360566.1 · 3-hydroxyacyl-ACP dehydratase FabZ | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 180.800 / 0.76000 | Bridge orthogroup OG0000074 |
| rnfAWP_005358598.1 · electron transport complex protein RnfA | High | Approved candidatestrong profile and bridge orthogroup support | 266.400 / 0.99500 | Bridge orthogroup OG0001169 |
| rnfBWP_005358577.1 · RnfABCDGE type electron transport complex subunit B | High | Approved candidatestrong profile and bridge orthogroup support | 323.200 / 0.93200 | Bridge orthogroup OG0001404 |
| rnfCWP_005358602.1 · electron transport complex subunit RsxC | High | Approved candidatestrong profile and bridge orthogroup support | 357.300 / 0.73900 | Bridge orthogroup OG0001114 |
| rnfDWP_040445756.1 · RnfABCDGE type electron transport complex subunit D | High | Approved candidatestrong profile and bridge orthogroup support | 323.500 / 0.93800 | Bridge orthogroup OG0001182 |
| rnfEWP_005358599.1 · electron transport complex subunit RsxE | High | Approved candidatestrong profile and bridge orthogroup support | 258.700 / 0.96200 | Bridge orthogroup OG0001153 |
| accAWP_084812540.1 · acetyl-CoA carboxylase carboxyltransferase subunit alpha | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 420.700 / 0.95200 | Profile only |
| accCWP_005360567.1 · acetyl-CoA carboxylase biotin carboxylase subunit | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 724.500 / 0.99600 | Profile only |
| bcdWP_005363815.1 · acyl-CoA dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 579.700 / 1.00000 | Profile only |
| etfAWP_370781887.1 · electron transfer flavoprotein subunit alpha/FixB family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 418.800 / 0.98800 | Profile only |
| etfBWP_040447366.1 · electron transfer flavoprotein subunit beta/FixA family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 312.400 / 1.00000 | Profile only |
| fabGWP_005362079.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 202.100 / 0.96400 | Profile only |
| fabGWP_005360520.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 132.000 / 0.98800 | Profile only |
| fabGWP_005363540.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 130.800 / 0.78200 | Bridge orthogroup OG0000242 |
| fabHWP_005360554.1 · beta-ketoacyl-ACP synthase III | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 320.000 / 0.97900 | Profile only |
| fabKWP_005360570.1 · NAD(P)H-dependent flavin oxidoreductase | Medium | Needs reviewno bridge-supported orthogroup; require domain, motif, or neighborhood confirmation | 175.000 / 0.92700 | Profile only |
| fabLWP_040446357.1 · 3-oxoacyl-[acyl-carrier-protein] reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 220.300 / 0.97200 | Profile only |
| fabLWP_005362079.1 · elongation factor P 5-aminopentanone reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.700 / 0.96400 | Profile only |
| fabLWP_005360520.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 121.600 / 0.98400 | Profile only |
| hbdWP_005363813.1 · 3-hydroxyacyl-CoA dehydrogenase family protein | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 392.100 / 0.98600 | Profile only |
| ldhWP_005363661.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 363.400 / 0.97200 | Profile only |
| thlWP_005363805.1 · acetyl-CoA C-acetyltransferase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 615.200 / 0.99500 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.