Assembly
ASM2531149v1
BioProject PRJNA880303 · BioSample SAMN30837125
GENOME-RESOLVED EVIDENCE
GCA_025311495.1
Limosilactobacillus oris · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2007883 bp · GC 49.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 0/8 | 0.000 | Partial/absent |
| lactate_entry_support | 0/2 | 0.000 | Partial/absent |
| reverse_beta_oxidation_core | 1/4 | 0.250 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| adhEWP_003715960.1 · bifunctional acetaldehyde-CoA/alcohol dehydrogenase | High | Approved candidatestrong profile and bridge orthogroup support; annotation support: gene_symbol | 1056.400 / 0.99100 | Bridge orthogroup OG0002334 |
| thlWP_194175965.1 · thiolase family protein | High | Approved candidatestrong profile and bridge orthogroup support | 516.500 / 0.99700 | Bridge orthogroup OG0000010 |
| accCWP_260902368.1 · pyruvate carboxylase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 516.100 / 0.98900 | Profile only |
| crtWP_260898341.1 · 1,4-dihydroxy-2-naphthoyl-CoA synthase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 154.000 / 0.98800 | Profile only |
| fabGWP_003714897.1 · (S)-acetoin forming diacetyl reductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 203.200 / 0.97200 | Bridge orthogroup OG0000008 |
| fabGWP_062812625.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 179.300 / 0.98000 | Profile only |
| fabGWP_191363436.1 · SDR family NAD(P)-dependent oxidoreductase | High | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 163.000 / 0.87500 | Bridge orthogroup OG0000242 |
| fabGWP_191363599.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 133.300 / 0.98800 | Profile only |
| fabLWP_003714897.1 · (S)-acetoin forming diacetyl reductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 199.200 / 0.97600 | Profile only |
| fabLWP_062812625.1 · SDR family oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 176.700 / 0.96800 | Profile only |
| fabLWP_191363436.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 145.800 / 0.88500 | Profile only |
| fabLWP_191363599.1 · SDR family NAD(P)-dependent oxidoreductase | Medium | Needs reviewextreme per-proteome copy number; profile alone is not function-specific | 126.000 / 0.98400 | Profile only |
| ldhWP_003714655.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 385.200 / 0.98400 | Profile only |
| ldhWP_191363929.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 333.500 / 0.98400 | Profile only |
| ldhWP_260898781.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 255.900 / 0.97500 | Profile only |
| ldhWP_194176587.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 252.400 / 0.96800 | Profile only |
| ldhWP_260898671.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 245.700 / 0.95900 | Profile only |
| ldhWP_062814042.1 · L-lactate dehydrogenase | Medium | Needs reviewretain confidence tier and orthogroup-support fields during import | 233.200 / 0.96800 | Profile only |
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.